PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004436.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 175aa    MW: 19115.2 Da    PI: 5.353
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004436.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2323e-108352855
                      AP2 28 rkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++r++lg+f taeeAa+a+++a+  ++g
  Itr_sc004436.1_g00002.1  8 KRRVWLGTFETAEEAARAYDEAAILMNG 35
                             59*********************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.131143IPR001471AP2/ERF domain
SMARTSM003807.4E-13549IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-12644IPR016177DNA-binding domain
PfamPF008479.4E-7735IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18744IPR001471AP2/ERF domain
CDDcd000189.59E-20845No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MHISIYRKRR VWLGTFETAE EAARAYDEAA ILMNGRNAKT NFPVAANKDG KEDKSSSSAA  60
SSSSSSSSSS LSAILSAKLR KCCKSLSPSL TCLRLDTENS NIGVWQKRAG TSSDSNWVMT  120
VELGNKQPPP PKQESLSSET SEHTRDAVIV DDGNQTVNEE EKMALQMIEE LLNEN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1714191e-100GU171419.1 Puccinia kuehnii microsatellite Stv_Puk_51 sequence.
GenBankGU1715511e-100GU171551.1 Ipomoea batatas microsatellite Stv_Ipb_169 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268413.23e-64PREDICTED: ethylene-responsive transcription factor WIN1
SwissprotQ9XI334e-58WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLS8CLD55e-65S8CLD5_9LAMI; Uncharacterized protein
STRINGGSMUA_Achr9P28540_0012e-61(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13522476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.15e-45ERF family protein